scMultiSim

①Install

<1>创建环境及R包LIGER安装

mamba create -n scMTNI fftw=3.3.10 hdf5
eval "$(mamba shell hook --shell bash)"
mamba activate scMTNI
mamba install r=4.3.1 r-hdf5r r-hdf5r.extra 
mamba install bioconda::bioconductor-delayedarray
mamba install bioconda::bioconductor-hdf5array
mamba install r-devtools r-seurat r-signac r-rcppplanc
R

按照流程不会出错

--------------------------------------------------------------
         FFTW transforms passed basic tests!
--------------------------------------------------------------

记得以后跑的时候

ligerObj <- runTSNE(ligerObj, method = "fftRtsne", fitsnePath = "/cpfs01/projects-HDD/cfff-afe2df89e32e_HDD/zy_22111220045/Tool/FItSNE_local/FIt-SNE")

安装R包

mamba create -n Otaku r=4.3.1 r-seurat bioconda::r-leidenbase zlib xz bioconductor-genomeinfodb     bioconductor-genomicranges     bioconductor-iranges     bioconductor-rsamtools     bioconductor-s4vectors     bioconductor-biocgenerics 


install.packages("BiocManager")
chooseBioCmirror()
BiocManager::install("GenomeInfoDbData")
# BiocManager::install(c('GenomeInfoDb', 'GenomicRanges', 'IRanges', 'Rsamtools', 'S4Vectors', 'BiocGenerics'))
install.packages("Signac")