ST配准

环境安装

STAlign

Allensdk

mamba create -n allensdk python=3.10 numpy=1.23 pandas=1.5.3 "scipy<1.11" "xarray<2023.2.0"  scanpy=1.10.4 python-igraph  leidenalg ipykernel -y
pip install allensdk
python -m ipykernel install --user --name allensdk --display-name "Py310 allensdk"

验证：

import allensdk
print(allensdk.__version__)
# 2.16.2
import scanpy
print(scanpy.__version__)
# 1.10.4