peddy

"Multitudes, multitudes in the valley of decision:
for the day of the LORD is near
in the valley of decision."
— Joel 3:14 (King James Version)

Peddy

安装

mamba create -n peddy -y --override-channels -c conda-forge -c bioconda python=3.10 numpy=1.26.4 "pandas<3" cython cyvcf2 networkx matplotlib scikit-learn click coloredlogs seaborn ipykernel plink plink2 bcftools r-base r-data.table
# git clone https://github.com/brentp/peddy
mamba activate peddy
cd /cpfs01/projects-HDD/cfff-afe2df89e32e_HDD/public/czh_data/Tanzimat/env/peddy
python -m pip install --no-deps --no-build-isolation -e .

python -m ipykernel install --user --name peddy --display-name "Py310 peddy"